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rcutsmart buffer  (New England Biolabs)


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    Structured Review

    New England Biolabs rcutsmart buffer
    Rcutsmart Buffer, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 948 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rcutsmart+buffer/rCutSmart+Buffer/pmc13123379-163-53-55
    Average 99 stars, based on 948 article reviews
    rcutsmart buffer - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    other:

    Article Title: Protocol for Using CRISPR-Cas9 to Generate a Monocyte Cell Line Harboring a Single-Nucleotide Polymorphism
    Article Snippet: T4 polynucleotide kinase (PNK) (Thermoscientific, catalog number: EK0031) 4. rCutSmart buffer, 10× (New England BioLabs, catalog number: B6004S) 5.

    Extraction:

    Article Title: Profiling KRAS mutations in whole blood by error-corrected maximum depth sequencing.
    Article Snippet: .. For each sample, two replicate library preparations were performed for the forward strand, reverse strand, or both as follows: 5 μg of genomic DNA from whole blood extraction above was mixed with 5 μL of rCutsmart buffer (NEB catalogue #B6004S) and 2.5 μL of 10000U/mL StuI (NEB catalogue #R0187L, KRAS exon 2 forward strand) or HinfI (NEB catalogue # R0155L, KRAS exon 2 reverse strand), brought to a total volume of 50 μL with distilled H2O, and incubated at 37oC overnight. .. Digested DNA was purified with a Qiagen PCR purification kit (Qiagen Catalogue # 28104) according to manufacturer protocol and eluted in 66 μL of distilled H2O.

    Incubation:

    Article Title: Profiling KRAS mutations in whole blood by error-corrected maximum depth sequencing.
    Article Snippet: .. For each sample, two replicate library preparations were performed for the forward strand, reverse strand, or both as follows: 5 μg of genomic DNA from whole blood extraction above was mixed with 5 μL of rCutsmart buffer (NEB catalogue #B6004S) and 2.5 μL of 10000U/mL StuI (NEB catalogue #R0187L, KRAS exon 2 forward strand) or HinfI (NEB catalogue # R0155L, KRAS exon 2 reverse strand), brought to a total volume of 50 μL with distilled H2O, and incubated at 37oC overnight. .. Digested DNA was purified with a Qiagen PCR purification kit (Qiagen Catalogue # 28104) according to manufacturer protocol and eluted in 66 μL of distilled H2O.

    Article Title: Amyloid plaques associated with shift in patterns of hippocampal tau pathology in middle age.
    Article Snippet: PCR was performed using 100 ng of DNA, 0.2 μM of primers 1 and 2 (primer 1: 5′-ACAGAATTCGCCCCGGCCTGGTACACTGCCA-3′, primer 2: 5′-TCCAAGGAGCTGCAGGCGGCGCA-3′) and 2× Rapid Taq Master Mix (#P222, Vazyme, Nanjing, PRC). .. After denaturation at 95°C for 3 min, PCR was performed for 36 cycles of 95°C for 15 s, 69°C for 15 s and 72°C for 15 s, and a final extension at 72°C for 15 min. From each PCR reaction, approximately half the products were incubated with 5 units of AflIII in r3.1 buffer (#R0541L, New England Biolabs, Ipswich, MA, USA) and the other half with HaeIII in rCutSmart buffer (#R0107L, New England Biolabs, Ipswich, MA, USA) for at least 3 h at 37°C. .. The products were run on a 2.5% agarose gel in TBE buffer (#351-001-131, Quality Biological, Gaithersburg, MD, USA) with GelRed Nucleic Acid Stain (# SCT121, MilliporeSigma, Burlington, MA, USA).

    Amplification:

    Article Title: FINE-EM-seq: a rapid isothermal amplification method enabling comprehensive methylome profiling of zebrafish early embryos
    Article Snippet: For methylation libraries, EM-seq adapters (NEB, cat. no. E7140) were used instead. .. A 10-μl isothermal amplification reaction was assembled containing the adaptor-ligated DNA, 250 nM each of forward and reverse primers (sequences listed in ), 5% PEG8000 (Beyotime), 2 mM DTT (BioFroxx), 0.4 mM dNTPs (Vazyme), 300 ng/μL T4 gp32 protein (ABclonal), 0.1 U/μL Bsu DNA polymerase (ABclonal), and 0.4 U/μL Nt.BsmAI (NEB), in 1× rCutSmart buffer (NEB). ..

    Article Title: FINE-EM-seq: a rapid isothermal amplification method enabling comprehensive methylome profiling of zebrafish early embryos
    Article Snippet: For methylation 6 libraries, EM-seq adapters (NEB, cat. no. E7140) were used instead. .. A 10-μl isothermal amplification reaction was assembled containing the adaptor-ligated DNA, 9 250 nM each of forward and reverse primers (sequences listed in Table S7), 5% PEG8000 10 (Beyotime), 2 mM DTT (BioFroxx), 0.4 mM dNTPs (Vazyme), 300 ng/μl T4 gp32 protein 11 (ABclonal), 0.1 U/μl Bsu DNA polymerase (ABclonal), and 0.4 U/μl Nt.BsmAI (NEB), in 1× 12 rCutSmart buffer (NEB). ..

    Polymerase Chain Reaction:

    Article Title: Amyloid plaques associated with shift in patterns of hippocampal tau pathology in middle age.
    Article Snippet: PCR was performed using 100 ng of DNA, 0.2 μM of primers 1 and 2 (primer 1: 5′-ACAGAATTCGCCCCGGCCTGGTACACTGCCA-3′, primer 2: 5′-TCCAAGGAGCTGCAGGCGGCGCA-3′) and 2× Rapid Taq Master Mix (#P222, Vazyme, Nanjing, PRC). .. After denaturation at 95°C for 3 min, PCR was performed for 36 cycles of 95°C for 15 s, 69°C for 15 s and 72°C for 15 s, and a final extension at 72°C for 15 min. From each PCR reaction, approximately half the products were incubated with 5 units of AflIII in r3.1 buffer (#R0541L, New England Biolabs, Ipswich, MA, USA) and the other half with HaeIII in rCutSmart buffer (#R0107L, New England Biolabs, Ipswich, MA, USA) for at least 3 h at 37°C. .. The products were run on a 2.5% agarose gel in TBE buffer (#351-001-131, Quality Biological, Gaithersburg, MD, USA) with GelRed Nucleic Acid Stain (# SCT121, MilliporeSigma, Burlington, MA, USA).



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